STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK66363.1Urocanate hydratase. (247 aa)    
Predicted Functional Partners:
SHJ79225.1
Urea carboxylase.
  
    0.953
SHK66386.1
Histidine ammonia-lyase.
  
  
 0.927
SHJ73247.1
Histidine ammonia-lyase.
  
  
 0.855
SHK15128.1
Histidine ammonia-lyase.
  
  
 0.855
SHJ19571.1
DNA-binding transcriptional regulator, IclR family.
 
     0.775
SHI55883.1
DNA-binding transcriptional regulator, IclR family.
 
     0.774
SHK15159.1
Transcriptional regulator, IclR family.
 
     0.768
SHI56827.1
Imidazolonepropionase.
  
  
 0.745
SHI65965.1
Imidazolonepropionase.
  
  
 0.745
SHI82509.1
Imidazolonepropionase.
  
  
 0.745
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.