STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK66746.1TRAP-type mannitol/chloroaromatic compound transport system, small permease component. (205 aa)    
Predicted Functional Partners:
SHK66771.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.967
SHK66720.1
TRAP transporter, DctM subunit.
 
 
 0.962
SHK66818.1
4-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.788
SHK66792.1
Predicted amidohydrolase.
       0.779
SHJ49400.1
TRAP transporter, DctM subunit.
  
 
 0.724
SHJ82399.1
TRAP-type C4-dicarboxylate transport system, large permease component.
  
 
 0.724
SHK66686.1
Regulator of RNase E activity RraA.
       0.676
SHJ49431.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
  
 0.613
SHK66847.1
DNA-binding transcriptional regulator, GntR family.
       0.547
SHK66653.1
Broad specificity phosphatase PhoE.
       0.404
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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