STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK67208.1Threonine dehydrogenase. (362 aa)    
Predicted Functional Partners:
SHK67179.1
Protein of unknown function.
       0.773
SHK67291.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
     0.760
SHK67229.1
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
 
     0.754
SHK67258.1
Simple sugar transport system ATP-binding protein.
       0.698
SHI79203.1
Hypothetical protein.
    
  0.619
SHK67148.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.574
SHK67097.1
Galactonate dehydratase.
       0.530
SHK67124.1
DNA-binding transcriptional regulator, FadR family.
       0.530
SHK67001.1
2-dehydro-3-deoxygluconokinase/2-dehydro-3- deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
       0.515
SHK67031.1
2-dehydro-3-deoxygluconokinase.
       0.507
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.