STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK69228.1Type I restriction enzyme, S subunit/type I restriction enzyme M protein. (212 aa)    
Predicted Functional Partners:
SHK69198.1
Type I restriction enzyme M protein.
 
 0.999
SHK49394.1
N-6 DNA Methylase.
 
 0.984
SHJ17143.1
5-methylcytosine-specific restriction enzyme B.
  
  
 0.980
SHJ17331.1
Hypothetical protein.
  
 
 0.973
SHJ23087.1
Hypothetical protein.
  
  
 0.960
SHJ17305.1
Hypothetical protein.
  
    0.953
SHJ91729.1
Predicted ATPase.
 
    0.877
SHK69174.1
Hypothetical protein.
 
     0.869
SHJ11117.1
Hypothetical protein.
  
    0.840
SHK55424.1
Hypothetical protein.
  
    0.840
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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