STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK73963.1Cellulose binding domain-containing protein. (889 aa)    
Predicted Functional Partners:
SHJ89509.1
Cellulose binding domain-containing protein.
    
0.789
SHK58108.1
Pectate lyase.
  
     0.746
SHK13671.1
Ricin-type beta-trefoil lectin domain-like.
  
     0.740
SHJ34835.1
Chitin-binding protein.
  
     0.737
SHK73937.1
Cellulose 1,4-beta-cellobiosidase; Belongs to the glycosyl hydrolase family 6.
 
    
0.737
SHI78320.1
Pectate lyase.
  
     0.708
SHK89000.1
Hypothetical protein.
  
     0.708
SHK89032.1
Right handed beta helix region.
 
     0.685
SHI47031.1
Endo-1,4-beta-xylanase.
     0.655
SHK86208.1
Lysophospholipase L1.
  
 
   0.631
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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