STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK84428.1Hypothetical protein. (520 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.587
SHJ02747.1
Hypothetical protein.
    
   0.507
SHJ08807.1
Hypothetical protein.
    
   0.507
SHJ10809.1
Collagen triple helix repeat-containing protein.
    
   0.507
SHJ33923.1
Prenyltransferase and squalene oxidase repeat-containing protein.
    
   0.507
SHJ43508.1
Repeat domain-containing protein.
    
   0.507
SHJ66794.1
Hypothetical protein.
    
   0.507
SHJ89532.1
Glycosyl hydrolase family 65, N-terminal domain.
    
   0.507
SHK01231.1
LPXTG-motif cell wall anchor domain-containing protein.
    
   0.507
SHK01262.1
Hypothetical protein.
    
   0.507
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.