STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK91998.1Pentapeptide repeat-containing protein. (492 aa)    
Predicted Functional Partners:
SHI76917.1
Protein of unknown function.
  
     0.648
SHK01262.1
Hypothetical protein.
  
     0.571
SHK76618.1
Outer membrane protein OmpA.
  
     0.559
SHK76959.1
Hypothetical protein.
  
     0.536
SHK83830.1
Type VII secretion integral membrane protein EccD.
  
     0.520
SHI58112.1
Geranylgeranyl pyrophosphate synthase.
  
     0.519
SHJ60746.1
TQXA domain-containing protein.
  
     0.504
SHK90313.1
Smr domain-containing protein.
  
     0.503
SHK76892.1
Hypothetical protein.
  
     0.502
SHJ59416.1
16S rRNA (guanine966-N2)-methyltransferase.
  
    0.488
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.