STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK95360.1Hypothetical protein. (539 aa)    
Predicted Functional Partners:
SHK95394.1
Acyl-CoA synthetase (NDP forming).
 
     0.847
SHK95458.1
Acetolactate synthase-1/2/3 large subunit; Belongs to the TPP enzyme family.
 
     0.836
SHK95490.1
Hypothetical protein.
 
     0.830
SHK95325.1
Hypothetical protein.
       0.799
SHJ79225.1
Urea carboxylase.
  
    0.781
SHK70777.1
Acyl-CoA reductase.
  
     0.734
SHK70897.1
2-dehydropantoate 2-reductase.
  
     0.730
frc
formyl-CoA transferase; Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl- CoA to oxalate; Belongs to the CoA-transferase III family. Frc subfamily.
 
     0.676
SHK39831.1
Cation-transporting ATPase E.
    
 0.654
SHK83395.1
CHRD domain-containing protein.
  
     0.612
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.