STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL53934.1dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family. (456 aa)    
Predicted Functional Partners:
SFL54141.1
Sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.958
SFM47075.1
Sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.958
SFL84151.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
  
 
 0.951
SFL46988.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.884
SFL53953.1
Acetyltransferase (GNAT) domain-containing protein.
 
     0.863
SFM80928.1
Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase.
 
 0.837
SFL54016.1
Exosortase A system-associated hydrolase 1.
 
     0.827
SFL53975.1
Acyl carrier protein.
 
 
   0.825
SFL53995.1
Exosortase A system-associated hydrolase 2.
 
     0.822
SFL54033.1
Glycosyl transferases group 1.
 
  
 0.814
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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