STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL60525.1Type I secretion system ABC transporter, HlyB family. (511 aa)    
Predicted Functional Partners:
SFL60548.1
Hemolysin D.
 0.978
SFM91362.1
HlyD family secretion protein.
 0.976
SFM17301.1
NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains.
   
  0.949
SFL48978.1
Membrane fusion protein, protease secretion system.
 0.946
SFM23370.1
HlyD family secretion protein.
 
 0.924
msbA
ATP-binding cassette, subfamily B, MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
0.877
SFL60389.1
HlyD family secretion protein.
  
 0.872
SFL67995.1
Membrane fusion protein, multidrug efflux system.
  
 0.872
SFL70458.1
Multidrug resistance efflux pump.
  
 0.872
SFL83243.1
RND family efflux transporter, MFP subunit.
  
 0.872
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.