STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL64255.1Zn-binding Pro-Ala-Ala-Arg (PAAR) domain-containing protein, incolved in TypeVI secretion. (88 aa)    
Predicted Functional Partners:
SFL64272.1
Type VI secretion system secreted protein VgrG.
 
   
 0.923
SFM86191.1
Phage late control gene D protein (GPD).
 
   
 0.831
SFM18620.1
Type VI secretion system secreted protein VgrG.
 
   
 0.830
SFM83353.1
Phage late control gene D protein (GPD).
 
   
 0.826
SFL64127.1
Type VI secretion system protein ImpJ.
 
  
 0.806
SFM42866.1
Type VI secretion system protein VasD.
 
  
 0.803
SFM42662.1
Type VI secretion system protein ImpL.
 
   
 0.797
SFL64146.1
Type VI secretion system protein ImpG.
 
  
 0.788
SFM42832.1
Type VI secretion system protein DotU.
 
  
 0.787
SFM81406.1
Uncharacterized conserved protein, DUF2345 family.
 
   
 0.787
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.