STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL69631.1Predicted DNA-binding protein, contains XRE-type HTH domain. (93 aa)    
Predicted Functional Partners:
SFL49919.1
Predicted DNA-binding protein, contains XRE-type HTH domain.
  
     0.770
SFL43373.1
Hypothetical protein.
      0.641
SFM71783.1
DNA-damage-inducible protein J.
 
     0.552
SFM14914.1
Protein of unknown function.
  
     0.503
SFM04031.1
Hypothetical protein.
  
  
 0.478
SFL69615.1
Peptidyl-dipeptidase A.
       0.465
SFL66128.1
Protein of unknown function.
  
     0.457
SFM51451.1
RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB.
  
     0.431
SFL89980.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.413
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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