STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL74439.1Amidohydrolase family protein. (715 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
 
 0.949
hutH
Histidine ammonia-lyase.
  
  
 0.802
SFM05296.1
Histidine ammonia-lyase.
  
  
 0.802
SFM27066.1
Histidine ammonia-lyase.
  
  
 0.802
SFL43458.1
N-formylglutamate deformylase.
 
  
 0.798
SFM39226.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
 
     0.727
SFM03289.1
Agmatinase; Belongs to the arginase family.
  
 
 0.650
SFM10647.1
Arginase; Belongs to the arginase family.
  
 
 0.650
SFM39370.1
Arginase; Belongs to the arginase family.
  
 
 0.650
SFL81907.1
Dipeptidyl-peptidase-4.
 
    0.633
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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