SFL84099.1 protein (Rugamonas rubra) - STRING interaction network

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Score

SFL84099.1

ATP-binding cassette, subfamily F, uup. (667 aa)

Predicted Functional Partners:

rplU

0.920

rpsO

0.914

rplD

0.911

rpsC

0.910

rpmE2

0.909

rplM

0.908

rplT

0.907

rpsG

0.905

rplC

0.904

rpsD

0.904

Your Current Organism:

Rugamonas rubra

NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFL84099.1	rplC	SAMN02982985_01734	SAMN02982985_05025	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.904
SFL84099.1	rplD	SAMN02982985_01734	SAMN02982985_05026	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.911
SFL84099.1	rplM	SAMN02982985_01734	SAMN02982985_04464	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.908
SFL84099.1	rplT	SAMN02982985_01734	SAMN02982985_00720	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.907
SFL84099.1	rplU	SAMN02982985_01734	SAMN02982985_02325	ATP-binding cassette, subfamily F, uup.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.920
SFL84099.1	rpmE2	SAMN02982985_01734	SAMN02982985_00094	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L31.	0.909
SFL84099.1	rpsC	SAMN02982985_01734	SAMN02982985_05031	ATP-binding cassette, subfamily F, uup.	Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.910
SFL84099.1	rpsD	SAMN02982985_01734	SAMN02982985_05050	ATP-binding cassette, subfamily F, uup.	Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.904
SFL84099.1	rpsG	SAMN02982985_01734	SAMN02982985_05505	ATP-binding cassette, subfamily F, uup.	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.905
SFL84099.1	rpsO	SAMN02982985_01734	SAMN02982985_04073	ATP-binding cassette, subfamily F, uup.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.914
rplC	SFL84099.1	SAMN02982985_05025	SAMN02982985_01734	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	ATP-binding cassette, subfamily F, uup.	0.904
rplC	rplD	SAMN02982985_05025	SAMN02982985_05026	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	SAMN02982985_05025	SAMN02982985_04464	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplT	SAMN02982985_05025	SAMN02982985_00720	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
rplC	rplU	SAMN02982985_05025	SAMN02982985_02325	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
rplC	rpmE2	SAMN02982985_05025	SAMN02982985_00094	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Large subunit ribosomal protein L31.	0.997
rplC	rpsC	SAMN02982985_05025	SAMN02982985_05031	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsD	SAMN02982985_05025	SAMN02982985_05050	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
rplC	rpsG	SAMN02982985_05025	SAMN02982985_05505	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
rplC	rpsO	SAMN02982985_05025	SAMN02982985_04073	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999