STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL85017.1Hypothetical protein. (187 aa)    
Predicted Functional Partners:
SFL85057.1
General secretion pathway protein D.
  
 
 0.958
SFM22622.1
Hypothetical protein.
  
 
 0.948
SFM71880.1
Type IV pilus assembly protein PilN.
  
 
 0.948
SFM71913.1
Type IV pilus assembly protein PilP.
  
 
 0.947
SFL84940.1
General secretion pathway protein F.
   
 
 0.933
SFL84963.1
General secretion pathway protein E.
  
 
 0.926
SFL44732.1
General secretion pathway protein D; Belongs to the bacterial secretin family.
  
 
 0.825
SFM71930.1
Type IV pilus assembly protein PilQ.
  
 
 0.825
SFL85076.1
General secretion pathway protein G.
     
 0.806
SFL85095.1
General secretion pathway protein G.
     
 0.806
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.