STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL87886.1Outer membrane protein (porin). (329 aa)    
Predicted Functional Partners:
SFM39792.1
OmpA-OmpF porin, OOP family; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
 0.894
SFM35919.1
Phospholipid-binding lipoprotein MlaA.
   
 
 0.792
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
    
 
 0.735
SFM90858.1
Vitamin B12 transporter.
    
 
 0.679
SFM92805.1
Iron complex outermembrane recepter protein.
    
 
 0.679
SFM14421.1
OmpA-OmpF porin, OOP family.
   
 0.670
SFM39226.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
  
 
 0.670
SFL73928.1
Outer membrane protein (porin).
  
  
 
0.669
SFL73953.1
Outer membrane protein (porin).
  
  
 
0.668
SFM05071.1
Outer membrane protein (porin).
  
  
 
0.668
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
Server load: low (18%) [HD]