STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL89620.1Methanobactin biosynthesis cassette protein MbnH. (404 aa)    
Predicted Functional Partners:
SFL89648.1
Methanobactin biosynthesis cassette protein MbnP.
 
     0.951
SFM28206.1
Protein SCO1/2.
   
 0.924
SFM28223.1
Selenium-binding protein 1.
 
 
 0.826
SFL53137.1
AZL_007920/MXAN_0976 family protein.
 
     0.794
SFM19901.1
40-residue YVTN family beta-propeller repeat-containing protein.
  
 
 0.783
SFM87499.1
40-residue YVTN family beta-propeller repeat-containing protein.
  
 
 0.783
SFM90014.1
40-residue YVTN family beta-propeller repeat-containing protein.
  
 
 0.783
SFL89597.1
Outer membrane transport energization protein TonB.
       0.773
SFM39226.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
   
   0.718
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
   0.708
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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