SFM05866.1 protein (Rugamonas rubra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFM05866.1

ATP-binding cassette, subfamily B. (759 aa)

Predicted Functional Partners:

SFM26708.1

0.941

SFM94159.1

0.941

SFM23201.1

0.938

SFL87825.1

0.936

SFM05847.1

0.930

SFM91373.1

0.867

SFL60525.1

0.862

SFM23327.1

0.862

SFM23343.1

0.862

SFM05880.1

0.841

Your Current Organism:

Rugamonas rubra

NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFL60525.1	SFM05847.1	SAMN02982985_00894	SAMN02982985_02582	Type I secretion system ABC transporter, HlyB family.	Protein of unknown function.	0.845
SFL60525.1	SFM05866.1	SAMN02982985_00894	SAMN02982985_02583	Type I secretion system ABC transporter, HlyB family.	ATP-binding cassette, subfamily B.	0.862
SFL87825.1	SFM05847.1	SAMN02982985_01833	SAMN02982985_02582	Amino acid adenylation domain-containing protein.	Protein of unknown function.	0.936
SFL87825.1	SFM05866.1	SAMN02982985_01833	SAMN02982985_02583	Amino acid adenylation domain-containing protein.	ATP-binding cassette, subfamily B.	0.936
SFL87825.1	SFM05880.1	SAMN02982985_01833	SAMN02982985_02584	Amino acid adenylation domain-containing protein.	Cyanophycin synthetase.	0.894
SFL87825.1	SFM23201.1	SAMN02982985_01833	SAMN02982985_03286	Amino acid adenylation domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SFL87825.1	SFM26708.1	SAMN02982985_01833	SAMN02982985_03395	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SFL87825.1	SFM94159.1	SAMN02982985_01833	SAMN02982985_05870	Amino acid adenylation domain-containing protein.	Thioesterase domain-containing protein.	0.999
SFM05847.1	SFL60525.1	SAMN02982985_02582	SAMN02982985_00894	Protein of unknown function.	Type I secretion system ABC transporter, HlyB family.	0.845
SFM05847.1	SFL87825.1	SAMN02982985_02582	SAMN02982985_01833	Protein of unknown function.	Amino acid adenylation domain-containing protein.	0.936
SFM05847.1	SFM05866.1	SAMN02982985_02582	SAMN02982985_02583	Protein of unknown function.	ATP-binding cassette, subfamily B.	0.930
SFM05847.1	SFM05880.1	SAMN02982985_02582	SAMN02982985_02584	Protein of unknown function.	Cyanophycin synthetase.	0.852
SFM05847.1	SFM23201.1	SAMN02982985_02582	SAMN02982985_03286	Protein of unknown function.	Acyl transferase domain-containing protein.	0.938
SFM05847.1	SFM23327.1	SAMN02982985_02582	SAMN02982985_03292	Protein of unknown function.	NHLM bacteriocin system ABC transporter, ATP-binding protein.	0.845
SFM05847.1	SFM23343.1	SAMN02982985_02582	SAMN02982985_03293	Protein of unknown function.	NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein.	0.845
SFM05847.1	SFM26708.1	SAMN02982985_02582	SAMN02982985_03395	Protein of unknown function.	Amino acid adenylation domain-containing protein.	0.941
SFM05847.1	SFM91373.1	SAMN02982985_02582	SAMN02982985_05765	Protein of unknown function.	ATP-binding cassette, subfamily B.	0.845
SFM05847.1	SFM94159.1	SAMN02982985_02582	SAMN02982985_05870	Protein of unknown function.	Thioesterase domain-containing protein.	0.941
SFM05866.1	SFL60525.1	SAMN02982985_02583	SAMN02982985_00894	ATP-binding cassette, subfamily B.	Type I secretion system ABC transporter, HlyB family.	0.862
SFM05866.1	SFL87825.1	SAMN02982985_02583	SAMN02982985_01833	ATP-binding cassette, subfamily B.	Amino acid adenylation domain-containing protein.	0.936