STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM12676.1Type IV pilus assembly protein PilY1. (744 aa)    
Predicted Functional Partners:
SFM12660.1
Type IV pilus assembly protein PilX.
 
  
 0.990
SFM12687.1
Type IV pilus assembly protein PilE.
 
  
 0.973
SFM12629.1
Type IV pilus assembly protein PilV.
 
  
 0.969
SFM12641.1
Type IV pilus assembly protein PilW.
  
  
 0.961
SFM12717.1
Type IV fimbrial biogenesis protein FimT.
 
  
 0.906
SFL56586.1
Type IV pilus assembly protein PilE.
 
  
 0.858
SFL56546.1
Type IV pilus assembly protein PilV.
  
  
 0.835
SFM71913.1
Type IV pilus assembly protein PilP.
 
  
 0.832
SFM71880.1
Type IV pilus assembly protein PilN.
 
  
 0.823
SFM71892.1
Type IV pilus assembly protein PilO.
  
  
 0.799
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.