STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM13456.1Circadian clock protein KaiC. (486 aa)    
Predicted Functional Partners:
SFL48556.1
PAS domain S-box-containing protein.
 
 
 
 0.973
SFM25848.1
PAS domain S-box-containing protein.
 
 
 
 0.971
SFM13417.1
Signal transduction histidine kinase.
   
 
 0.939
SFL43028.1
Signal transduction histidine kinase.
   
 
 0.867
SFM25888.1
Two-component system, NarL family, sensor histidine kinase UhpB.
   
 
 0.858
SFL45406.1
Two-component system, OmpR family, sensor histidine kinase KdpD.
    
 
 0.847
SFM04947.1
Two-component system, NtrC family, sensor histidine kinase GlrK.
    
 
 0.847
SFM35697.1
PAS domain S-box-containing protein.
    
 
 0.847
SFM57453.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
    
 
 0.847
SFM13438.1
Hypothetical protein.
       0.803
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.