STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM13819.1Hypothetical protein. (347 aa)    
Predicted Functional Partners:
SFM13593.1
Hypothetical protein.
 
 
 0.999
SFM13720.1
Hypothetical protein.
 
 
 0.999
SFM13786.1
Hypothetical protein.
 
  
 0.996
SFL52791.1
Hypothetical protein.
  
 
 0.994
SFL52909.1
Hypothetical protein.
  
 
 0.992
SFM13736.1
Hypothetical protein.
 
  
 0.989
SFM13612.1
Phage-related baseplate assembly protein.
 
  
 0.986
SFM13561.1
Phage baseplate assembly protein V.
 
  
 0.985
SFM13802.1
P2-like prophage tail protein X.
  
  
 0.985
SFL52759.1
Hypothetical protein.
   
   0.961
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.