STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM23439.1Uncharacterized protein YcsI, UPF0317 family; Belongs to the D-glutamate cyclase family. (257 aa)    
Predicted Functional Partners:
SFM23459.1
Sugar phosphate permease.
 
    0.945
SFL67249.1
Transcriptional regulator, IclR family.
  
    0.727
SFM23414.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.709
pcp
Pyroglutamyl-peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.
  
    0.634
SFM79336.1
NRAMP (natural resistance-associated macrophage protein) metal ion transporters.
  
    0.567
SFM23480.1
5-oxoprolinase (ATP-hydrolysing).
       0.547
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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