STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM28258.1Iron complex outermembrane recepter protein. (685 aa)    
Predicted Functional Partners:
SFL76135.1
Iron complex outermembrane recepter protein.
  
 
  0.791
SFM52555.1
TonB dependent receptor.
  
     0.746
SFM03582.1
Iron complex outermembrane recepter protein.
  
     0.695
SFL54643.1
Outer membrane receptor proteins, mostly Fe transport.
  
 
  0.689
SFL98860.1
Iron complex outermembrane recepter protein.
  
     0.666
SFL68182.1
Iron complex outermembrane recepter protein.
  
 
  0.663
SFM44761.1
Iron complex outermembrane recepter protein.
  
     0.643
SFM28271.1
Protein of unknown function.
 
     0.626
SFL99074.1
TonB-dependent Receptor Plug Domain.
  
     0.600
SFL99148.1
Iron complex outermembrane recepter protein.
  
 
  0.599
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.