STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM29823.1Single Cache domain 2-containing protein. (154 aa)    
Predicted Functional Partners:
SFM10367.1
PAS domain S-box-containing protein.
  
  
  0.711
SFM92328.1
Hpt domain-containing protein.
  
  
 0.704
SFL43225.1
Response regulator receiver domain-containing protein.
    
 0.696
SFM61448.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.690
SFM77612.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
 0.690
SFL47843.1
Two-component system, LuxR family, sensor histidine kinase DctS.
  
  
  0.681
SFM47979.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.676
SFL90273.1
Signal transduction histidine kinase.
 
   
 0.661
SFM31216.1
Two-component system, cell cycle response regulator DivK.
    
 0.661
SFM14362.1
His Kinase A (phospho-acceptor) domain-containing protein.
    
 0.660
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.