STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM32442.1Long-chain acyl-CoA synthetase. (556 aa)    
Predicted Functional Partners:
SFM94159.1
Thioesterase domain-containing protein.
 
 0.998
SFM26708.1
Amino acid adenylation domain-containing protein.
  
0.995
SFL87825.1
Amino acid adenylation domain-containing protein.
  
0.993
SFM96376.1
Amino acid adenylation domain-containing protein.
0.983
SFL45692.1
HxxPF-repeated domain-containing protein.
 
 0.971
SFM23201.1
Acyl transferase domain-containing protein.
 
 0.967
SFM05528.1
1-acyl-sn-glycerol-3-phosphate acyltransferases.
 
 0.949
SFL59363.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
    
 
 0.909
SFM50502.1
Amino acid adenylation domain-containing protein.
  
0.894
rplF
Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.882
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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