SFM38379.1 protein (Rugamonas rubra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFM38379.1

Simple sugar transport system substrate-binding protein. (349 aa)

Predicted Functional Partners:

SFM38436.1

0.997

SFL43225.1

0.976

SFM22131.1

0.976

SFL90273.1

0.974

SFM38402.1

0.973

SFL49989.1

0.972

SFL90235.1

0.972

SFL90333.1

0.972

SFM10156.1

0.972

SFM61448.1

0.972

Your Current Organism:

Rugamonas rubra

NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFL43225.1	SFL49989.1	SAMN02982985_00097	SAMN02982985_00511	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.999
SFL43225.1	SFL90235.1	SAMN02982985_00097	SAMN02982985_01950	Response regulator receiver domain-containing protein.	Hypothetical protein.	0.999
SFL43225.1	SFL90273.1	SAMN02982985_00097	SAMN02982985_01952	Response regulator receiver domain-containing protein.	Signal transduction histidine kinase.	0.999
SFL43225.1	SFL90333.1	SAMN02982985_00097	SAMN02982985_01955	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.999
SFL43225.1	SFM10156.1	SAMN02982985_00097	SAMN02982985_02750	Response regulator receiver domain-containing protein.	Hypothetical protein.	0.999
SFL43225.1	SFM22131.1	SAMN02982985_00097	SAMN02982985_03233	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.999
SFL43225.1	SFM38379.1	SAMN02982985_00097	SAMN02982985_03869	Response regulator receiver domain-containing protein.	Simple sugar transport system substrate-binding protein.	0.976
SFL43225.1	SFM61448.1	SAMN02982985_00097	SAMN02982985_04709	Response regulator receiver domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.999
SFL49989.1	SFL43225.1	SAMN02982985_00511	SAMN02982985_00097	PAS domain S-box-containing protein.	Response regulator receiver domain-containing protein.	0.999
SFL49989.1	SFL90235.1	SAMN02982985_00511	SAMN02982985_01950	PAS domain S-box-containing protein.	Hypothetical protein.	0.999
SFL49989.1	SFL90273.1	SAMN02982985_00511	SAMN02982985_01952	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SFL49989.1	SFL90333.1	SAMN02982985_00511	SAMN02982985_01955	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.998
SFL49989.1	SFM10156.1	SAMN02982985_00511	SAMN02982985_02750	PAS domain S-box-containing protein.	Hypothetical protein.	0.999
SFL49989.1	SFM22131.1	SAMN02982985_00511	SAMN02982985_03233	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999
SFL49989.1	SFM38379.1	SAMN02982985_00511	SAMN02982985_03869	PAS domain S-box-containing protein.	Simple sugar transport system substrate-binding protein.	0.972
SFL49989.1	SFM61448.1	SAMN02982985_00511	SAMN02982985_04709	PAS domain S-box-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.999
SFL90235.1	SFL43225.1	SAMN02982985_01950	SAMN02982985_00097	Hypothetical protein.	Response regulator receiver domain-containing protein.	0.999
SFL90235.1	SFL49989.1	SAMN02982985_01950	SAMN02982985_00511	Hypothetical protein.	PAS domain S-box-containing protein.	0.999
SFL90235.1	SFL90273.1	SAMN02982985_01950	SAMN02982985_01952	Hypothetical protein.	Signal transduction histidine kinase.	0.999
SFL90235.1	SFL90333.1	SAMN02982985_01950	SAMN02982985_01955	Hypothetical protein.	PAS domain S-box-containing protein.	0.999