STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM55916.1Hypothetical protein. (259 aa)    
Predicted Functional Partners:
thrB
Homoserine kinase; Belongs to the pseudomonas-type ThrB family.
       0.803
SFL43140.1
4-amino-4-deoxy-L-arabinose transferase.
  
     0.740
SFL56175.1
Cell division protein ZipA, interacts with FtsZ; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.726
SFM67031.1
Outer membrane protein (porin).
  
     0.677
SFL55191.1
Outer membrane protein (porin).
  
     0.670
SFM12831.1
Soluble lytic murein transglycosylase.
  
     0.664
SFM02960.1
Outer membrane protein assembly factor BamC.
  
     0.662
SFM54616.1
Protein of unknown function.
  
     0.662
SFM05071.1
Outer membrane protein (porin).
  
     0.657
SFM09670.1
Outer membrane protein (porin).
  
     0.656
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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