STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM57575.1Hypothetical protein. (314 aa)    
Predicted Functional Partners:
SFL42898.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+); Belongs to the malic enzymes family.
  
  
 0.848
SFM17183.1
Malic enzyme.
  
  
 0.848
SFL53035.1
Para-nitrobenzyl esterase.
  
  
  0.592
SFM27928.1
Hypothetical protein.
   
 0.502
SFM57555.1
Diguanylate cyclase (GGDEF) domain-containing protein.
       0.426
SFL81981.1
Chaperone modulatory protein CbpM.
  
     0.416
SFM57583.1
Transcriptional regulator, HxlR family.
       0.416
SFL80775.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
  
  
 0.410
SFM12908.1
formyl-CoA transferase; Belongs to the CoA-transferase III family.
  
  
 0.410
SFM77289.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
  
  
 0.410
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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