STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM72151.1Dynamin family protein. (641 aa)    
Predicted Functional Partners:
SFL90672.1
Protein of unknown function.
  
     0.766
SFM03808.1
Pilus assembly protein FimV.
  
     0.759
SFL99254.1
Hypothetical protein.
  
     0.743
SFL46817.1
Twitching motility protein PilI.
  
     0.727
SFM71913.1
Type IV pilus assembly protein PilP.
  
     0.710
SFL64892.1
Hypothetical protein.
  
     0.705
SFM27862.1
Type IV pilus assembly protein PilZ.
  
     0.695
mutM
DNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
       0.692
SFL46849.1
Chemotaxis protein histidine kinase CheA.
 
     0.668
SFM71892.1
Type IV pilus assembly protein PilO.
  
     0.668
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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