STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM76088.1EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant). (183 aa)    
Predicted Functional Partners:
SFL82316.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.995
SFM27705.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.995
SFL90197.1
Signal transduction histidine kinase.
 
 0.990
SFM48274.1
PAS domain S-box-containing protein.
 
 0.990
SFL43225.1
Response regulator receiver domain-containing protein.
  
 0.986
SFL88336.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.985
SFM92824.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.984
SFM34016.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.982
SFL91335.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.979
SFM50980.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.979
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
Server load: low (4%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.