STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM84855.1Long-chain fatty acid transport protein. (471 aa)    
Predicted Functional Partners:
SFM58229.1
3-hydroxyacyl-CoA dehydrogenase.
 
  
 0.540
SFM05248.1
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase.
  
  
 0.476
SFM79275.1
Long-chain acyl-CoA synthetase.
 
  
 0.458
SFL87825.1
Amino acid adenylation domain-containing protein.
  
  
 0.411
SFM26708.1
Amino acid adenylation domain-containing protein.
  
  
 0.406
SFM94159.1
Thioesterase domain-containing protein.
  
  
 0.406
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.