STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM88268.14a-hydroxytetrahydrobiopterin dehydratase. (129 aa)    
Predicted Functional Partners:
SFL73565.1
4-hydroxyphenylpyruvate dioxygenase.
  
  
 0.842
SFM19922.1
4-hydroxyphenylpyruvate dioxygenase.
  
  
 0.842
rsgA-2
Ribosome biogenesis GTPase; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.800
SFM88283.1
STE24 endopeptidase.
  
    0.797
SFM88237.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.610
orn
Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.
       0.594
SFM88334.1
Acetyl esterase/lipase.
   
   0.584
SFM19943.1
Aromatic-amino-acid transaminase.
  
  
 0.579
SFM42440.1
Aromatic-amino-acid transaminase.
  
  
 0.579
SFM43302.1
Maleylpyruvate isomerase.
  
  
 0.551
Your Current Organism:
Rugamonas rubra
NCBI taxonomy Id: 758825
Other names: ATCC 43154, CCM 3730, R. rubra, strain MOM 28/2/79
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