Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LSS_02002ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (829 aa)    
Predicted Functional Partners:
LSS_01997
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.951
LSS_04451
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.802
LSS_00395
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.753
LSS_07849
Lipoprotein releasing system ATPase LolD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.729
lolD
ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
 
 0.717
LSS_16176
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.717
LSS_02007
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.707
LSS_06484
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.694
LSS_01992
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.564
LSS_19483
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.473
Your Current Organism:
Leptospira santarosai
NCBI taxonomy Id: 758847
Other names: L. santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani LT 821, Leptospira santarosai serovar Shermani str. ATCC 43286, Leptospira santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani strain LT 821
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