Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LSS_02419Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (552 aa)    
Predicted Functional Partners:
LSS_14159
Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.884
LSS_17600
Peptidyl-prolyl cis-trans isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.820
LSS_11840
Sigma factor regulatory protein FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.794
LSS_13879
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.777
LSS_05850
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.774
LSS_14074
Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.773
LSS_04344
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.762
LSS_10663
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.759
LSS_11770
Peptidyl-prolyl cis-trans isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.754
LSS_12102
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.746
Your Current Organism:
Leptospira santarosai
NCBI taxonomy Id: 758847
Other names: L. santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani LT 821, Leptospira santarosai serovar Shermani str. ATCC 43286, Leptospira santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani strain LT 821
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