Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LSS_02809Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)    
Predicted Functional Partners:
LSS_05723
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.953
LSS_15456
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.949
LSS_02804
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
LSS_06739
Galactokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.585
LSS_22265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.572
LSS_15966
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.543
LSS_02799
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.512
LSS_16321
Ribokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.487
LSS_09404
Sigma factor PP2C phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.477
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.456
Your Current Organism:
Leptospira santarosai
NCBI taxonomy Id: 758847
Other names: L. santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani LT 821, Leptospira santarosai serovar Shermani str. ATCC 43286, Leptospira santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani strain LT 821
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