Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LSS_03359Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (641 aa)    
Predicted Functional Partners:
LSS_15521
Nitrogen-fixing protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.817
LSS_22400
NifU-like N-terminal domain protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.817
LSS_15541
Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.724
LSS_15536
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.674
LSS_19488
Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.674
LSS_03569
Fe-S metabolism protein SufE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.609
LSS_09269
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.550
LSS_10433
Sphingomyelinase C precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.495
LSS_17515
Sphingomyelinase C precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.495
LSS_18843
Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.495
Your Current Organism:
Leptospira santarosai
NCBI taxonomy Id: 758847
Other names: L. santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani LT 821, Leptospira santarosai serovar Shermani str. ATCC 43286, Leptospira santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani strain LT 821
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