Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LSS_03414Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)    
Predicted Functional Partners:
LSS_03409
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.927
LSS_03419
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.840
LSS_12332
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
LSS_04426
Membrane biogenesis protein AsmA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.756
LSS_05161
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.752
LSS_12242
Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.748
LSS_05643
Biopolymer transporter TolR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.739
LSS_11110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.737
LSS_09673
Chromosome segregation protein SMC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.732
LSS_18893
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.720
Your Current Organism:
Leptospira santarosai
NCBI taxonomy Id: 758847
Other names: L. santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani LT 821, Leptospira santarosai serovar Shermani str. ATCC 43286, Leptospira santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani strain LT 821
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