STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSS_03499FimH; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)    
Predicted Functional Partners:
LSS_07529
Cyclic diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.649
LSS_07109
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.618
LSS_17600
Peptidyl-prolyl cis-trans isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.614
LSS_01487
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.585
LSS_06165
c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.565
LSS_14456
Serine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.534
LSS_20740
Serine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.527
LSS_21960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.522
LSS_14214
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.507
LSS_12604
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.500
Your Current Organism:
Leptospira santarosai
NCBI taxonomy Id: 758847
Other names: L. santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani LT 821, Leptospira santarosai serovar Shermani str. ATCC 43286, Leptospira santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani strain LT 821
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.