Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSS_04401Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)    
Predicted Functional Partners:
LSS_21960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.760
LSS_06165
c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.758
LSS_07529
Cyclic diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.758
LSS_07884
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.753
LSS_15766
Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
LSS_14456
Serine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.742
LSS_09858
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.737
LSS_20740
Serine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.726
LSS_05543
Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.723
LSS_13689
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.723
Your Current Organism:
Leptospira santarosai
NCBI taxonomy Id: 758847
Other names: L. santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani LT 821, Leptospira santarosai serovar Shermani str. ATCC 43286, Leptospira santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani strain LT 821
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