Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
LSS_05850Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (675 aa)    
Predicted Functional Partners:
LSS_05855
Formate hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.829
LSS_17600
Peptidyl-prolyl cis-trans isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.827
LSS_05870
Formate hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.809
LSS_05643
Biopolymer transporter TolR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.796
LSS_14732
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.794
LSS_05865
Formate hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
LSS_05875
Metal (Ni/Fe) hydrogenase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
LSS_05880
Metal (Ni/Fe) hydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
LSS_06809
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.776
LSS_02419
Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.774
Your Current Organism:
Leptospira santarosai
NCBI taxonomy Id: 758847
Other names: L. santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani LT 821, Leptospira santarosai serovar Shermani str. ATCC 43286, Leptospira santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani strain LT 821
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