STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSS_06135Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (699 aa)    
Predicted Functional Partners:
LSS_06719
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.880
LSS_10878
RNA polymerase sigma54 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.843
LSS_19188
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.834
LSS_06714
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.776
LSS_19483
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.764
LSS_11785
Serine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.763
LSS_06784
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.725
LSS_10293
Histidine kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.714
LSS_02232
HD family phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.655
LSS_15966
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.646
Your Current Organism:
Leptospira santarosai
NCBI taxonomy Id: 758847
Other names: L. santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani LT 821, Leptospira santarosai serovar Shermani str. ATCC 43286, Leptospira santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani strain LT 821
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.