STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSS_20249ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)    
Predicted Functional Partners:
LSS_20244
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.931
LSS_20254
Phosphohistidine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.672
LSS_06240
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.643
LSS_09698
Gliding motility ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.630
LSS_20239
HD family phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.597
LSS_21125
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.572
cysS
cysteinyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   
 0.559
LSS_06155
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.539
LSS_09134
ATPase AAA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.524
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
    0.504
Your Current Organism:
Leptospira santarosai
NCBI taxonomy Id: 758847
Other names: L. santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani LT 821, Leptospira santarosai serovar Shermani str. ATCC 43286, Leptospira santarosai serovar Shermani str. LT 821, Leptospira santarosai serovar Shermani strain LT 821
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