STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHE95366.1Outer membrane assembly lipoprotein YfiO; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)    
Predicted Functional Partners:
AHE95346.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.957
AHE96590.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.943
AHE95365.1
Ribonuclease G; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.820
rsfS
Hypothetical protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
       0.803
AHE96729.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.776
flgG
Makes up the distal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.718
AHE95380.1
Organic solvent tolerance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.597
AHE95806.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.555
AHE95568.1
Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.501
AHE96001.1
Lipoprotein releasing system transmembrane protein, LolC/E family; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.472
Your Current Organism:
Thermocrinis ruber
NCBI taxonomy Id: 75906
Other names: DSM 23557, T. ruber, strain OC 1/4, strain OC 14/7/2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.