STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHE95632.1Carotenoid isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (488 aa)    
Predicted Functional Partners:
AHE95633.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.805
AHE95631.1
Photoreactivation-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.615
AHE95630.1
LytTR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.558
AHE96645.1
Geranylgeranyl reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.523
AHE95672.1
4-hydroxybenzoate polyprenyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UbiA prenyltransferase family.
  
  
 0.517
AHE95409.1
Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.476
AHE96658.1
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
  
 0.423
AHE96005.1
Geranylgeranyl reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.419
AHE95635.1
Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.400
Your Current Organism:
Thermocrinis ruber
NCBI taxonomy Id: 75906
Other names: DSM 23557, T. ruber, strain OC 1/4, strain OC 14/7/2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.