Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AHE95886.1Cation diffusion facilitator family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (385 aa)    
Predicted Functional Partners:
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
    0.813
AHE95884.1
Bacteriocin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AHE95885.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AHE95887.1
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AHE95888.1
Homoserine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.762
AHE95889.1
Fumarate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.594
AHE95852.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.582
AHE95890.1
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.536
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
       0.531
AHE96471.1
Zinc/iron permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.427
Your Current Organism:
Thermocrinis ruber
NCBI taxonomy Id: 75906
Other names: DSM 23557, T. ruber, strain OC 1/4, strain OC 14/7/2
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