STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHE95972.1OsmC family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)    
Predicted Functional Partners:
AHE95970.1
2-oxoglutarate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.802
AHE95971.1
acetyl-CoA carboxylase subunit alpha; Catalyzes the ATP-dependent carboxylation of a covalently attached biotin and the transfer of the carboxyl group to pyruvate forming oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.787
AHE96188.1
OsmC family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.775
AHE95969.1
Bacterioferritin comigratory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.710
AHE95968.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.500
AHE95967.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.456
AHE96799.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.412
Your Current Organism:
Thermocrinis ruber
NCBI taxonomy Id: 75906
Other names: DSM 23557, T. ruber, strain OC 1/4, strain OC 14/7/2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.