Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHE96803.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (121 aa)    
Predicted Functional Partners:
AHE96802.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
AHE95988.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.741
AHE95989.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.617
AHE95990.1
UDP-N-acetyl-D-galactosamine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.589
AHE96804.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.589
AHE95985.1
Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.524
AHE95986.1
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.524
AHE95987.1
Glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.524
AHE96801.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.524
AHE95984.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.466
Your Current Organism:
Thermocrinis ruber
NCBI taxonomy Id: 75906
Other names: DSM 23557, T. ruber, strain OC 1/4, strain OC 14/7/2
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