Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
AHE96062.1Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)    
Predicted Functional Partners:
AHE95996.1
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.981
cobB
NAD-dependent protein deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sirtuin family. Class III subfamily.
     
 0.776
AHE96059.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AHE96060.1
Beta lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AHE96061.1
2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AHE96063.1
DeoR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AHE96836.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.577
AHE96065.1
Acetoacetate metabolism regulatory protein AtoC; DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.577
AHE96835.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.568
AHE96881.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
0.480
Your Current Organism:
Thermocrinis ruber
NCBI taxonomy Id: 75906
Other names: DSM 23557, T. ruber, strain OC 1/4, strain OC 14/7/2
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