STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHE96103.1Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)    
Predicted Functional Partners:
AHE96098.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.983
AHE96100.1
Cobalt transporter CbiM; Catalyzes the ATP-dependent transport of cobalt; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.968
AHE96099.1
ABC type permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.961
AHE96101.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.805
AHE96102.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.805
AHE95640.1
Polyferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.751
AHE95641.1
TonB-denpendent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.691
AHE96703.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.676
AHE96104.1
NAD+ synthetase; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
       0.604
AHE95520.1
General secretion pathway protein K; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.594
Your Current Organism:
Thermocrinis ruber
NCBI taxonomy Id: 75906
Other names: DSM 23557, T. ruber, strain OC 1/4, strain OC 14/7/2
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