AHE96110.1 protein (Thermocrinis ruber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AHE96110.1

Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (739 aa)

Predicted Functional Partners:

AHE96112.1

0.997

hypA

0.950

AHE96113.1

0.917

AHE96115.1

0.893

AHE96095.1

0.888

AHE96094.1

0.877

AHE96114.1

0.808

AHE96842.1

0.550

AHE96843.1

0.546

AHE96096.1

0.421

Your Current Organism:

Thermocrinis ruber

NCBI taxonomy Id: 75906
Other names: DSM 23557, T. ruber, strain OC 1/4, strain OC 14/7/2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHE96094.1	AHE96095.1	THERU_04795	THERU_04800	Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase formation protein HypD; Necessary for the synthesis of all three hydrogenase isoenzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AHE96094.1	AHE96096.1	THERU_04795	THERU_04805	Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase maturation protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.836
AHE96094.1	AHE96110.1	THERU_04795	THERU_04875	Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
AHE96094.1	AHE96112.1	THERU_04795	THERU_04885	Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
AHE96094.1	AHE96113.1	THERU_04795	THERU_04890	Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase expression protein HupD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
AHE96094.1	AHE96115.1	THERU_04795	THERU_04900	Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
AHE96094.1	hypA	THERU_04795	THERU_04880	Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.	0.593
AHE96095.1	AHE96094.1	THERU_04800	THERU_04795	Hydrogenase formation protein HypD; Necessary for the synthesis of all three hydrogenase isoenzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AHE96095.1	AHE96096.1	THERU_04800	THERU_04805	Hydrogenase formation protein HypD; Necessary for the synthesis of all three hydrogenase isoenzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase maturation protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.844
AHE96095.1	AHE96110.1	THERU_04800	THERU_04875	Hydrogenase formation protein HypD; Necessary for the synthesis of all three hydrogenase isoenzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
AHE96095.1	AHE96112.1	THERU_04800	THERU_04885	Hydrogenase formation protein HypD; Necessary for the synthesis of all three hydrogenase isoenzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AHE96095.1	AHE96113.1	THERU_04800	THERU_04890	Hydrogenase formation protein HypD; Necessary for the synthesis of all three hydrogenase isoenzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase expression protein HupD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
AHE96095.1	AHE96115.1	THERU_04800	THERU_04900	Hydrogenase formation protein HypD; Necessary for the synthesis of all three hydrogenase isoenzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AHE96095.1	hypA	THERU_04800	THERU_04880	Hydrogenase formation protein HypD; Necessary for the synthesis of all three hydrogenase isoenzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.	0.807
AHE96096.1	AHE96094.1	THERU_04805	THERU_04795	Hydrogenase maturation protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
AHE96096.1	AHE96095.1	THERU_04805	THERU_04800	Hydrogenase maturation protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Hydrogenase formation protein HypD; Necessary for the synthesis of all three hydrogenase isoenzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
AHE96096.1	AHE96110.1	THERU_04805	THERU_04875	Hydrogenase maturation protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
AHE96096.1	hypA	THERU_04805	THERU_04880	Hydrogenase maturation protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.	0.790
AHE96110.1	AHE96094.1	THERU_04875	THERU_04795	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
AHE96110.1	AHE96095.1	THERU_04875	THERU_04800	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase formation protein HypD; Necessary for the synthesis of all three hydrogenase isoenzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888